RepetDB

RepetDB

RepetDB

RepetDB

REPETDB is a database of transposable elements. Reference sequences for various species are stored with the Intermine data warehouse framework. (Amselem et al, RepetDB: a unified resource for transposable element references. Mobile DNA. 2019;10:6.)

Reference transposable elements are presented with their evidences allowing to determine their classification according to PASTEC , the classifier of the REPET package. Transposable elements can be queried and visualized using the powerful capabilities of Intermine . 

RepetDB v2 contains 54 genomes were annotated using REPET v2.5 to v3.0 and formated by v3.0 standard 

Date de modification : 05 juillet 2023 | Date de création : 28 février 2022 | Rédaction : Nicolas Francillonne